IL_9WNQ_089

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_089 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0896

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9WNQ|1|b|U|703
9WNQ|1|b|G|704
9WNQ|1|b|A|705
9WNQ|1|b|A|706
9WNQ|1|b|G|707
*
9WNQ|1|b|U|724
9WNQ|1|b|G|725
9WNQ|1|b|G|726
9WNQ|1|b|A|727
9WNQ|1|b|G|728

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2