IL_9WNQ_100

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9WNQ|1|b|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_100 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.1957

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9WNQ|1|b|C|994
9WNQ|1|b|C|995
9WNQ|1|b|A|996
*
9WNQ|1|b|U|1159
9WNQ|1|b|G|1160

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain k

50S ribosomal protein L13

Chain r

Large ribosomal subunit protein bL20

Chain s

50S ribosomal protein L21