IL_9WNQ_120

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9WNQ|1|b|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_120 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4831

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9WNQ|1|b|C|1417
9WNQ|1|b|G|1418
9WNQ|1|b|A|1419
9WNQ|1|b|A|1420
9WNQ|1|b|G|1421
*
9WNQ|1|b|C|1577
9WNQ|1|b|U|1578
9WNQ|1|b|A|1579
9WNQ|1|b|A|1580
9WNQ|1|b|G|1581

Current chains

Chain b

23S ribosomal RNA

Nearby chains