IL_9WNQ_148

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_148 not in the Motif Atlas

Homologous match to IL_7A0S_073

Geometric discrepancy: 0.1355

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9WNQ|1|b|C|2050
9WNQ|1|b|A|2051
9WNQ|1|b|A|2052
*
9WNQ|1|b|U|2617
9WNQ|1|b|G|2618

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain d

50S ribosomal protein L3