IL_9WNQ_161

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_161 not in the Motif Atlas

Geometric match to IL_8B0X_147

Geometric discrepancy: 0.1015

The information below is about IL_8B0X_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9WNQ|1|b|A|2297
9WNQ|1|b|A|2298
9WNQ|1|b|U|2299
*
9WNQ|1|b|A|2317
9WNQ|1|b|G|2318
9WNQ|1|b|G|2319
9WNQ|1|b|U|2320
9WNQ|1|b|U|2321

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5