IL_9WNQ_173

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_173 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1394

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9WNQ|1|b|A|2589
9WNQ|1|b|A|2590
9WNQ|1|b|C|2591
*
9WNQ|1|b|G|2603
9WNQ|1|b|U|2604
9WNQ|1|b|U|2605

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2