IL_9WNQ_179

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9WNQ|1|b|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_179 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9WNQ|1|b|U|2680
9WNQ|1|b|C|2681
9WNQ|1|b|A|2682
9WNQ|1|b|C|2683
9WNQ|1|b|U|2684
*
9WNQ|1|b|A|2725
9WNQ|1|b|A|2726
9WNQ|1|b|A|2727

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L14

Chain q

Large ribosomal subunit protein bL19