IL_9WNR_001

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAAC*GUUA

Length

9 nucleotides

Bulged bases

9WNR|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_001 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.2294

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9WNR|1|A|U|30
9WNR|1|A|G|31
9WNR|1|A|A|32
9WNR|1|A|A|33
9WNR|1|A|C|34
*
9WNR|1|A|G|550
9WNR|1|A|U|551
9WNR|1|A|U|552
9WNR|1|A|A|553

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

Small ribosomal subunit protein uS12