IL_9WNR_025

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9WNR|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_025 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1411

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9WNR|1|A|C|569
9WNR|1|A|G|570
9WNR|1|A|U|571
9WNR|1|A|A|572
9WNR|1|A|A|573
9WNR|1|A|A|574
9WNR|1|A|G|575
*
9WNR|1|A|C|880
9WNR|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

30S ribosomal protein S17