IL_9WNR_080

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUGUG*CAUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_080 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3687

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

9WNR|1|b|G|283
9WNR|1|b|U|284
9WNR|1|b|G|285
9WNR|1|b|U|286
9WNR|1|b|G|287
*
9WNR|1|b|C|353
9WNR|1|b|A|354
9WNR|1|b|U|355
9WNR|1|b|G|356
9WNR|1|b|C|357

Current chains

Chain b

23S rRNA

Nearby chains