IL_9WNR_081

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_081 not in the Motif Atlas

Geometric match to IL_9E6Q_016

Geometric discrepancy: 0.1703

The information below is about IL_9E6Q_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9WNR|1|b|U|293
9WNR|1|b|A|294
9WNR|1|b|G|295
*
9WNR|1|b|C|343
9WNR|1|b|A|344
9WNR|1|b|A|345
9WNR|1|b|A|346
9WNR|1|b|A|347

Current chains

Chain b

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L24