IL_9WNR_084

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_084 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.1392

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9WNR|1|b|C|564
9WNR|1|b|C|565
9WNR|1|b|U|566
*
9WNR|1|b|A|575
9WNR|1|b|U|576
9WNR|1|b|G|577

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L15

Chain r

Large ribosomal subunit protein bL20

Chain s

50S ribosomal protein L21