IL_9WNR_121

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9WNR|1|b|A|1434, 9WNR|1|b|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_121 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.3783

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9WNR|1|b|G|1432
9WNR|1|b|A|1433
9WNR|1|b|A|1434
9WNR|1|b|G|1435
*
9WNR|1|b|C|1557
9WNR|1|b|C|1558
9WNR|1|b|U|1559
9WNR|1|b|G|1560
9WNR|1|b|C|1561

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2