IL_9WNR_122

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9WNR|1|b|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_122 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1807

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9WNR|1|b|C|1437
9WNR|1|b|U|1438
9WNR|1|b|A|1439
9WNR|1|b|U|1440
*
9WNR|1|b|A|1551
9WNR|1|b|A|1552
9WNR|1|b|A|1553
9WNR|1|b|U|1554
9WNR|1|b|G|1555

Current chains

Chain b

23S rRNA

Nearby chains