IL_9WNR_136

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9WNR|1|b|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_136 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.2885

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9WNR|1|b|U|1712
9WNR|1|b|A|1713
9WNR|1|b|U|1714
9WNR|1|b|G|1715
9WNR|1|b|U|1716
9WNR|1|b|A|1717
9WNR|1|b|G|1718
*
9WNR|1|b|U|1742
9WNR|1|b|G|1743
9WNR|1|b|A|1744
9WNR|1|b|A|1745
9WNR|1|b|A|1746

Current chains

Chain b

23S rRNA

Nearby chains