IL_9WNR_154

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUGA*UGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_154 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.345

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9WNR|1|b|U|2098
9WNR|1|b|U|2099
9WNR|1|b|G|2100
9WNR|1|b|A|2101
*
9WNR|1|b|U|2189
9WNR|1|b|G|2190
9WNR|1|b|A|2191

Current chains

Chain b

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9