IL_9WNR_168

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_168 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1392

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9WNR|1|b|C|2466
9WNR|1|b|C|2467
9WNR|1|b|A|2468
9WNR|1|b|A|2469
9WNR|1|b|G|2470
*
9WNR|1|b|C|2480
9WNR|1|b|G|2481
9WNR|1|b|A|2482
9WNR|1|b|C|2483
9WNR|1|b|G|2484

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain Z

Transfer RNA; tRNA

Chain n

50S ribosomal protein L16