IL_9WNR_181

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

9WNR|1|b|C|2712, 9WNR|1|b|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_181 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2795

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9WNR|1|b|U|2695
9WNR|1|b|U|2696
*
9WNR|1|b|A|2711
9WNR|1|b|C|2712
9WNR|1|b|U|2713
9WNR|1|b|G|2714

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL17

Chain q

Large ribosomal subunit protein bL19