IL_9WW4_005
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_005 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0308
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9WW4|1|AA|C|30
9WW4|1|AA|U|31
9WW4|1|AA|G|32
9WW4|1|AA|A|33
9WW4|1|AA|A|34
9WW4|1|AA|U|35
9WW4|1|AA|U|36
9WW4|1|AA|U|37
*
9WW4|1|AA|A|44
9WW4|1|AA|U|45
9WW4|1|AA|U|46
9WW4|1|AA|A|47
9WW4|1|AA|G|48
9WW4|1|AA|U|49
9WW4|1|AA|C|50
9WW4|1|AA|A|51
9WW4|1|AA|G|52
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AN
- 60S ribosomal protein L13
- Chain AP
- 60S ribosomal protein L15
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Al
- 60S ribosomal protein L37
- Chain Aq
- 60S ribosomal protein L36a
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