IL_9WW4_008

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9WW4|1|AA|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_008 not in the Motif Atlas

Homologous match to IL_8GLP_009

Geometric discrepancy: 0.1603

The information below is about IL_8GLP_009

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9WW4|1|AA|C|125
9WW4|1|AA|C|126
*
9WW4|1|AA|G|142
9WW4|1|AA|C|143
9WW4|1|AA|G|144

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AJ

60S ribosomal protein L7a

Chain AP

60S ribosomal protein L15

Chain AZ

60S ribosomal protein L23a

Chain Aj

60S ribosomal protein L35