IL_9WW4_023

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9WW4|1|AA|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_023 not in the Motif Atlas

Homologous match to IL_8GLP_026

Geometric discrepancy: 0.5661

The information below is about IL_8GLP_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|AA|A|466
9WW4|1|AA|U|467
9WW4|1|AA|U|468
9WW4|1|AA|C|469
9WW4|1|AA|A|470
9WW4|1|AA|A|471
9WW4|1|AA|C|472
*
9WW4|1|AA|G|682
9WW4|1|AA|C|683
9WW4|1|AA|G|684
9WW4|1|AA|C|685
9WW4|1|AA|A|686
9WW4|1|AA|U|687
9WW4|1|AA|U|688
9WW4|1|AA|U|689

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AH

Large ribosomal subunit protein eL6

Chain As

60S ribosomal protein L28