IL_9WW4_042

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_042 not in the Motif Atlas

Geometric match to IL_9H3G_022

Geometric discrepancy: 0.1565

The information below is about IL_9H3G_022

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW4|1|AA|G|1094
9WW4|1|AA|A|1095
9WW4|1|AA|C|1096
*
9WW4|1|AA|G|1199
9WW4|1|AA|G|1200
9WW4|1|AA|U|1201

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AU

60S ribosomal protein L18a

Chain AV

60S ribosomal protein L21