IL_9WW4_063
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_063 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1728
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9WW4|1|AA|C|1732
9WW4|1|AA|G|1733
9WW4|1|AA|G|1734
9WW4|1|AA|U|1735
9WW4|1|AA|A|1736
9WW4|1|AA|A|1737
*
9WW4|1|AA|PSU|1792
9WW4|1|AA|A|1793
9WW4|1|AA|A|1794
9WW4|1|AA|A|1795
9WW4|1|AA|U|1796
9WW4|1|AA|G|1797
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AI
- 60S ribosomal protein L7
- Chain AL
- Ribosomal protein uL16-like
- Chain AU
- 60S ribosomal protein L18a
- Chain AV
- 60S ribosomal protein L21
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