IL_9WW4_084

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_084 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0348

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9WW4|1|AA|G|2358
9WW4|1|AA|U|2359
9WW4|1|AA|A|2360
9WW4|1|AA|G|2361
9WW4|1|AA|U|2362
9WW4|1|AA|A2M|2363
9WW4|1|AA|OMG|2364
*
9WW4|1|AA|C|3858
9WW4|1|AA|G|3859
9WW4|1|AA|A|3860
9WW4|1|AA|A|3861
9WW4|1|AA|A|3862
9WW4|1|AA|C|3863

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AR

60S ribosomal protein L17