IL_9WW4_112

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_112 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1851

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|AA|PSU|3715
9WW4|1|AA|C|3716
9WW4|1|AA|A|3717
9WW4|1|AA|A2M|3718
9WW4|1|AA|A|3719
9WW4|1|AA|G|3720
9WW4|1|AA|U|3721
*
9WW4|1|AA|A|3732
9WW4|1|AA|A|3733
9WW4|1|AA|U|3734
9WW4|1|AA|G|3735
9WW4|1|AA|A|3736
9WW4|1|AA|A|3737
9WW4|1|AA|G|3738

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Ak

60S ribosomal protein L36

Chain Aq

60S ribosomal protein L36a