IL_9WW4_114

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9WW4|1|AA|A2M|3785, 9WW4|1|AA|C|3791, 9WW4|1|AA|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_114 not in the Motif Atlas

Homologous match to IL_9SUM_083

Geometric discrepancy: 0.0441

The information below is about IL_9SUM_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

9WW4|1|AA|C|3781
9WW4|1|AA|5MC|3782
9WW4|1|AA|A|3783
9WW4|1|AA|A|3784
9WW4|1|AA|A2M|3785
9WW4|1|AA|U|3786
9WW4|1|AA|G|3787
9WW4|1|AA|C|3788
9WW4|1|AA|C|3789
9WW4|1|AA|U|3790
9WW4|1|AA|C|3791
9WW4|1|AA|OMG|3792
*
9WW4|1|AA|OMC|3808
9WW4|1|AA|G|3809
9WW4|1|AA|C|3810
9WW4|1|AA|G|3811

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain Ap

60S ribosomal protein L41

Chain BA

Small subunit ribosomal RNA; SSU rRNA