IL_9WW4_118

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9WW4|1|AA|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_118 not in the Motif Atlas

Homologous match to IL_9SUM_087

Geometric discrepancy: 0.0646

The information below is about IL_9SUM_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9WW4|1|AA|G|3916
9WW4|1|AA|A|3917
*
9WW4|1|AA|U|4384
9WW4|1|AA|A|4385
9WW4|1|AA|C|4386
9WW4|1|AA|C|4387

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8