IL_9WW4_128

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GC(PSU)*GA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_128 not in the Motif Atlas

Homologous match to IL_9H3G_117

Geometric discrepancy: 0.0871

The information below is about IL_9H3G_117

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW4|1|AA|G|4401
9WW4|1|AA|C|4402
9WW4|1|AA|PSU|4403
*
9WW4|1|AA|G|4440
9WW4|1|AA|A|4441
9WW4|1|AA|PSU|4442

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AL

Ribosomal protein uL16-like

Chain Ad

60S ribosomal protein L29