IL_9WW4_145

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9WW4|1|AA|U|4634, 9WW4|1|AA|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_145 not in the Motif Atlas

Homologous match to IL_8GLP_318

Geometric discrepancy: 0.1778

The information below is about IL_8GLP_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43276.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|AA|U|4632
9WW4|1|AA|G|4633
9WW4|1|AA|U|4634
9WW4|1|AA|A|4635
9WW4|1|AA|PSU|4636
9WW4|1|AA|OMG|4637
*
9WW4|1|AA|C|4662
9WW4|1|AA|G|4663
9WW4|1|AA|A|4664
9WW4|1|AA|A|4665
9WW4|1|AA|G|4666

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AY

60S ribosomal protein L24

Chain Af

60S ribosomal protein L31