IL_9WW4_181

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_181 not in the Motif Atlas

Homologous match to IL_9PN5_151

Geometric discrepancy: 0.1323

The information below is about IL_9PN5_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.4

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|OMU|116
9WW4|1|BA|C|117
9WW4|1|BA|C|118
9WW4|1|BA|PSU|119
9WW4|1|BA|U|120
9WW4|1|BA|OMU|121
*
9WW4|1|BA|A|343
9WW4|1|BA|U|344
9WW4|1|BA|U|345
9WW4|1|BA|C|346
9WW4|1|BA|G|347

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8