IL_9WW4_183

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9WW4|1|BA|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_183 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.1038

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9WW4|1|BA|G|145
9WW4|1|BA|G|146
9WW4|1|BA|A|147
9WW4|1|BA|U|148
9WW4|1|BA|A|149
9WW4|1|BA|A|150
9WW4|1|BA|C|151
*
9WW4|1|BA|G|167
9WW4|1|BA|C|168
9WW4|1|BA|U|169
9WW4|1|BA|A|170
9WW4|1|BA|A|171
9WW4|1|BA|OMU|172
9WW4|1|BA|A|173
9WW4|1|BA|OMC|174

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AY

60S ribosomal protein L24

Chain BW

40S ribosomal protein S6

Chain Bc

40S ribosomal protein S24