IL_9WW4_190

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(PSU)UUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_190 not in the Motif Atlas

Homologous match to IL_9PN5_160

Geometric discrepancy: 0.1904

The information below is about IL_9PN5_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9WW4|1|BA|PSU|366
9WW4|1|BA|U|367
9WW4|1|BA|U|368
9WW4|1|BA|C|369
9WW4|1|BA|G|370
9WW4|1|BA|A|371
*
9WW4|1|BA|U|393
9WW4|1|BA|G|394

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AT

60S ribosomal protein L19

Chain BH

40S ribosomal protein S8

Chain BJ

40S ribosomal protein S11