IL_9WW4_193

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_193 not in the Motif Atlas

Homologous match to IL_9PN5_163

Geometric discrepancy: 0.1256

The information below is about IL_9PN5_163

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9WW4|1|BA|C|459
9WW4|1|BA|A|460
9WW4|1|BA|U|461
*
9WW4|1|BA|A2M|468
9WW4|1|BA|A|469
9WW4|1|BA|G|470

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AX

60S ribosomal protein L23

Chain BW

40S ribosomal protein S6