IL_9WW4_195

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_195 not in the Motif Atlas

Homologous match to IL_9SUM_161

Geometric discrepancy: 0.0777

The information below is about IL_9SUM_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26900.4

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|C|491
9WW4|1|BA|C|492
9WW4|1|BA|A|493
9WW4|1|BA|C|494
9WW4|1|BA|U|495
*
9WW4|1|BA|A|508
9WW4|1|BA|OMG|509

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24