IL_9WW4_203

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9WW4|1|BA|A|628, 9WW4|1|BA|U|630, 9WW4|1|BA|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_203 not in the Motif Atlas

Homologous match to IL_9PN5_173

Geometric discrepancy: 0.1528

The information below is about IL_9PN5_173

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|G|611
9WW4|1|BA|U|612
9WW4|1|BA|G|613
9WW4|1|BA|C|614
9WW4|1|BA|C|615
9WW4|1|BA|A|616
9WW4|1|BA|G|617
*
9WW4|1|BA|C|624
9WW4|1|BA|G|625
9WW4|1|BA|G|626
9WW4|1|BA|U|627
9WW4|1|BA|A|628
9WW4|1|BA|A|629
9WW4|1|BA|U|630
9WW4|1|BA|U|631
9WW4|1|BA|C|632

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BQ

40S ribosomal protein S23

Chain Bf

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein