IL_9WW4_205

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GU(PSU)(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9WW4|1|BA|A2M|668

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_205 not in the Motif Atlas

Homologous match to IL_9PN5_174

Geometric discrepancy: 0.0633

The information below is about IL_9PN5_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|G|665
9WW4|1|BA|U|666
9WW4|1|BA|PSU|667
9WW4|1|BA|A2M|668
9WW4|1|BA|A|669
9WW4|1|BA|A|670
9WW4|1|BA|A|671
*
9WW4|1|BA|U|1161
9WW4|1|BA|C|1162

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BQ

40S ribosomal protein S23

Chain BR

40S ribosomal protein S26