IL_9WW4_208

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_208 not in the Motif Atlas

Homologous match to IL_9PN5_178

Geometric discrepancy: 0.0989

The information below is about IL_9PN5_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.5

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

26

Unit IDs

9WW4|1|BA|A|802
9WW4|1|BA|C|803
*
9WW4|1|BA|G|860
9WW4|1|BA|A|861
9WW4|1|BA|A|862
9WW4|1|BA|PSU|863

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BG

40S ribosomal protein S7

Chain BJ

40S ribosomal protein S11

Chain BQ

40S ribosomal protein S23

Chain Bb

40S ribosomal protein S15a