IL_9WW4_214

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9WW4|1|BA|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_214 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.071

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW4|1|BA|G|925
9WW4|1|BA|A|926
9WW4|1|BA|C|927
*
9WW4|1|BA|G|1014
9WW4|1|BA|U|1015
9WW4|1|BA|U|1016
9WW4|1|BA|U|1017

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain Ae

60S ribosomal protein L30

Chain BZ

40S ribosomal protein S13

Chain Be

40S ribosomal protein S27