IL_9WW4_218

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9WW4|1|BA|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_218 not in the Motif Atlas

Homologous match to IL_9H3G_202

Geometric discrepancy: 0.1613

The information below is about IL_9H3G_202

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9WW4|1|BA|G|952
9WW4|1|BA|C|953
9WW4|1|BA|U|954
9WW4|1|BA|A|955
9WW4|1|BA|G|956
*
9WW4|1|BA|C|967
9WW4|1|BA|U|968
9WW4|1|BA|U|969
9WW4|1|BA|G|970
9WW4|1|BA|G|971
9WW4|1|BA|A|972
9WW4|1|BA|C|973
9WW4|1|BA|C|974

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

40S ribosomal protein S3a

Chain Ba

Small ribosomal subunit protein uS11