IL_9WW4_224

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_224 not in the Motif Atlas

Geometric match to IL_8GLP_246

Geometric discrepancy: 0.0444

The information below is about IL_8GLP_246

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9WW4|1|BA|G|1108
9WW4|1|BA|C|1109
9WW4|1|BA|G|1110
*
9WW4|1|BA|C|1123
9WW4|1|BA|C|1124

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BC

Small ribosomal subunit protein uS2

Chain BD

40S ribosomal protein S3a

Chain Be

40S ribosomal protein S27

Chain Bh

40S ribosomal protein S17