IL_9WW4_225

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAGUA(PSU)G*(PSU)GAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_225 not in the Motif Atlas

Homologous match to IL_9PN5_194

Geometric discrepancy: 0.0541

The information below is about IL_9PN5_194

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|G|1168
9WW4|1|BA|G|1169
9WW4|1|BA|A|1170
9WW4|1|BA|G|1171
9WW4|1|BA|U|1172
9WW4|1|BA|A|1173
9WW4|1|BA|PSU|1174
9WW4|1|BA|G|1175
*
9WW4|1|BA|PSU|1186
9WW4|1|BA|G|1187
9WW4|1|BA|A|1188
9WW4|1|BA|A|1189
9WW4|1|BA|A|1190
9WW4|1|BA|C|1191

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41

Chain BQ

40S ribosomal protein S23