IL_9WW4_228

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9WW4|1|BA|C|1215, 9WW4|1|BA|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_228 not in the Motif Atlas

Homologous match to IL_9SUM_192

Geometric discrepancy: 0.0949

The information below is about IL_9SUM_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9WW4|1|BA|A|1214
9WW4|1|BA|C|1215
9WW4|1|BA|C|1216
9WW4|1|BA|A|1217
*
9WW4|1|BA|U|1681
9WW4|1|BA|C|1682
9WW4|1|BA|C|1683
9WW4|1|BA|C|1684
9WW4|1|BA|U|1685

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BL

40S ribosomal protein S16

Chain BR

40S ribosomal protein S26

Chain BS

40S ribosomal protein S28