IL_9WW4_229

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC(PSU)*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_229 not in the Motif Atlas

Homologous match to IL_9SUM_194

Geometric discrepancy: 0.0967

The information below is about IL_9SUM_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9WW4|1|BA|C|1230
9WW4|1|BA|C|1231
9WW4|1|BA|PSU|1232
*
9WW4|1|BA|G|1526
9WW4|1|BA|C|1527
9WW4|1|BA|G|1528

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19

Chain BO

40S ribosomal protein S20