IL_9WW4_242
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 9WW4|1|BA|U|1397
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_242 not in the Motif Atlas
- Geometric match to IL_8GLP_337
- Geometric discrepancy: 0.1316
- The information below is about IL_8GLP_337
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9WW4|1|BA|C|1395
9WW4|1|BA|A|1396
9WW4|1|BA|U|1397
9WW4|1|BA|G|1398
9WW4|1|BA|C|1399
*
9WW4|1|BA|OMG|1447
9WW4|1|BA|A|1448
9WW4|1|BA|G|1449
9WW4|1|BA|G|1450
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BL
- 40S ribosomal protein S16
- Chain BO
- 40S ribosomal protein S20
- Chain BU
- Receptor of activated protein C kinase 1
- Chain Bh
- 40S ribosomal protein S17
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