IL_9WW4_243

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9WW4|1|BA|C|1403, 9WW4|1|BA|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_243 not in the Motif Atlas

Homologous match to IL_9PN5_213

Geometric discrepancy: 0.1642

The information below is about IL_9PN5_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|BA|A|1402
9WW4|1|BA|C|1403
9WW4|1|BA|U|1404
9WW4|1|BA|A|1405
*
9WW4|1|BA|U|1441
9WW4|1|BA|OMU|1442
9WW4|1|BA|C|1443
9WW4|1|BA|U|1444

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BO

40S ribosomal protein S20

Chain BU

Receptor of activated protein C kinase 1