IL_9WW4_258

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUA*U(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_258 not in the Motif Atlas

Homologous match to IL_9SUM_223

Geometric discrepancy: 0.0956

The information below is about IL_9SUM_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9WW4|1|BA|U|1729
9WW4|1|BA|U|1730
9WW4|1|BA|A|1731
*
9WW4|1|BA|U|1803
9WW4|1|BA|OMU|1804
9WW4|1|BA|G|1805

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L23

Chain BH

40S ribosomal protein S8