IL_9WW5_006

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_006 not in the Motif Atlas

Homologous match to IL_8GLP_006

Geometric discrepancy: 0.0531

The information below is about IL_8GLP_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.6

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9WW5|1|AA|C|81
9WW5|1|AA|U|82
9WW5|1|AA|C|83
9WW5|1|AA|A|84
9WW5|1|AA|G|85
9WW5|1|AA|U|86
9WW5|1|AA|A|87
9WW5|1|AA|A|88
*
9WW5|1|AA|U|96
9WW5|1|AA|G|97
9WW5|1|AA|A|98
9WW5|1|AA|A|99
9WW5|1|AA|C|100
9WW5|1|AA|A|101
9WW5|1|AA|G|102

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain AS

60S ribosomal protein L18

Chain Ac

Large ribosomal subunit protein uL15