IL_9WW5_016

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9WW5|1|AA|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_016 not in the Motif Atlas

Homologous match to IL_8GLP_018

Geometric discrepancy: 0.0895

The information below is about IL_8GLP_018

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9WW5|1|AA|G|348
9WW5|1|AA|A|349
9WW5|1|AA|C|350
*
9WW5|1|AC|G|25
9WW5|1|AC|C|26

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Aa

60S ribosomal protein L26