IL_9WW5_019

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

9WW5|1|AA|U|1302, 9WW5|1|AA|A|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_019 not in the Motif Atlas

Homologous match to IL_8GLP_022

Geometric discrepancy: 0.448

The information below is about IL_8GLP_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9WW5|1|AA|G|443
9WW5|1|AA|G|444
9WW5|1|AA|U|445
9WW5|1|AA|C|446
*
9WW5|1|AA|G|1300
9WW5|1|AA|C|1301
9WW5|1|AA|U|1302
9WW5|1|AA|A|1303
9WW5|1|AA|C|1304

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain Ag

60S ribosomal protein L32

Chain Ah

60S ribosomal protein L35a