IL_9WW5_024

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9WW5|1|AA|G|483, 9WW5|1|AA|U|484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_024 not in the Motif Atlas

Geometric match to IL_9I0V_004

Geometric discrepancy: 0.1376

The information below is about IL_9I0V_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9WW5|1|AA|G|482
9WW5|1|AA|G|483
9WW5|1|AA|U|484
9WW5|1|AA|C|485
*
9WW5|1|AA|G|671
9WW5|1|AA|C|672

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain As

60S ribosomal protein L28